- name: adapterremoval test_adapterremoval_single_end
  command: nextflow run tests/software/adapterremoval -entry test_adapterremoval_single_end -c tests/config/nextflow.config
  tags:
    - adapterremoval_single_end
    - adapterremoval
  files:
    - path: output/adapterremoval/test.log
      md5sum: 2fd3d5d703b63ba33a83021fccf25f77
    - path: output/adapterremoval/test.trimmed.fastq.gz
      md5sum: 62139afee94defad5b83bdd0b8475a1f

- name: adapterremoval test_adapterremoval_paired_end
  command: nextflow run tests/software/adapterremoval -entry test_adapterremoval_paired_end -c tests/config/nextflow.config
  tags:
    - adapterremoval_paired_end
    - adapterremoval
  files:
    - path: output/adapterremoval/test.pair2.trimmed.fastq.gz
      md5sum: f076a9f666235e01a3281f8c46c9d010
    - path: output/adapterremoval/test.log
      md5sum: bea86105aff4d27fe29c83e24498fefa
    - path: output/adapterremoval/test.pair1.trimmed.fastq.gz
      md5sum: f076a9f666235e01a3281f8c46c9d010

- name: adapterremoval test_adapterremoval_paired_end_collapse
  command: nextflow run tests/software/adapterremoval -entry test_adapterremoval_paired_end_collapse -c tests/config/nextflow.config
  tags:
    - adapterremoval_paired_end_collapse
    - adapterremoval
  files:
    - path: output/adapterremoval/test.log
      md5sum: 97cb97b3d03123ac88430768b2e36c59
    - path: output/adapterremoval/test.merged.fastq.gz
      md5sum: 50a4f9fdac6a24e211eb4dcf9f292bef