- name: stringtie forward-strand
  command: nextflow run ./tests/software/stringtie/ -entry test_stringtie_forward -c tests/config/nextflow.config
  tags:
    - stringtie
  files:
    - path: ./output/test_stringtie_forward/test.transcripts.gtf
      md5sum: cbce87f06598eb756e7670ba3217a42f
    - path: ./output/test_stringtie_forward/test.gene.abundance.txt
      md5sum: 7d8bce7f2a922e367cedccae7267c22e
    - path: ./output/test_stringtie_forward/test.coverage.gtf
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: ./output/test_stringtie_forward/test.ballgown/e_data.ctab
      md5sum: 6b4cf69bc03f3f69890f972a0e8b7471
    - path: ./output/test_stringtie_forward/test.ballgown/i_data.ctab
      md5sum: be3abe09740603213f83d50dcf81427f
    - path: ./output/test_stringtie_forward/test.ballgown/t_data.ctab
      md5sum: 3b66c065da73ae0dd41cc332eff6a818
    - path: ./output/test_stringtie_forward/test.ballgown/i2t.ctab
      md5sum: 8a117c8aa4334b4c2d4711932b006fb4
    - path: ./output/test_stringtie_forward/test.ballgown/e2t.ctab
      md5sum: e981c0038295ae54b63cedb1083f1540

- name: stringtie reverse-strand
  command: nextflow run ./tests/software/stringtie/ -entry test_stringtie_reverse -c tests/config/nextflow.config
  tags:
    - stringtie
  files:
    - path: ./output/test_stringtie_reverse/test.transcripts.gtf
      md5sum: bb992085e42bad19877c847dae496c80
    - path: ./output/test_stringtie_reverse/test.gene.abundance.txt
      md5sum: 7385b870b955dae2c2ab78a70cf05cce
    - path: ./output/test_stringtie_reverse/test.coverage.gtf
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: ./output/test_stringtie_reverse/test.ballgown/e_data.ctab
      md5sum: 879b6696029d19c4737b562e9d149218
    - path: ./output/test_stringtie_reverse/test.ballgown/i_data.ctab
      md5sum: be3abe09740603213f83d50dcf81427f
    - path: ./output/test_stringtie_reverse/test.ballgown/t_data.ctab
      md5sum: 3b66c065da73ae0dd41cc332eff6a818
    - path: ./output/test_stringtie_reverse/test.ballgown/i2t.ctab
      md5sum: 8a117c8aa4334b4c2d4711932b006fb4
    - path: ./output/test_stringtie_reverse/test.ballgown/e2t.ctab
      md5sum: e981c0038295ae54b63cedb1083f1540