name: bedtools_makewindows description: Makes adjacent or sliding windows across a genome or BED file. keywords: - bed - windows tools: - bedtools: description: A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. homepage: https://bedtools.readthedocs.io documentation: https://bedtools.readthedocs.io/en/latest/content/tools/makewindows.html tool_dev_url: None doi: "10.1093/bioinformatics/btq033" licence: ['MIT'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - regions: type: file description: BED file OR Genome details file () pattern: "*.{bed,fai,tab}" - use_bed: type: boolean description: true = input is a BED file; false = input is a genome details file output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - tab: type: file description: Windows TAB file (BED or BED-like format) pattern: "*.tab" authors: - "@kevbrick"