name: pbbam_pbmerge description: The pbbam software package provides components to create, query, & edit PacBio BAM files and associated indices. These components include a core C++ library, bindings for additional languages, and command-line utilities. keywords: - pbbam - pbbam/pbmerge tools: - pbbam: description: PacBio BAM C++ library homepage: https://github.com/PacificBiosciences/pbbioconda documentation: https://pbbam.readthedocs.io/en/latest/tools/pbmerge.html tool_dev_url: https://github.com/pacificbiosciences/pbbam/ doi: "" licence: ['BSD-3-Clause-Clear'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - bam: type: file description: BAM files to merge pattern: "*.bam" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - bam: type: file description: The merged bam file pattern: "*.bam" - pbi: type: file description: BAM Pacbio index file pattern: "*.bam.pbi" authors: - "@sguizard"