name: sratools_prefetch description: Download sequencing data from the NCBI Sequence Read Archive (SRA). keywords: - sequencing - fastq - prefetch tools: - sratools: description: SRA Toolkit and SDK from NCBI homepage: https://github.com/ncbi/sra-tools documentation: https://github.com/ncbi/sra-tools/wiki tool_dev_url: https://github.com/ncbi/sra-tools licence: ['US-Government-Work'] input: - meta: type: map description: > Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - id: type: val description: > A string denoting an SRA id. output: - meta: type: map description: > Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - sra: type: directory description: > Directory containing the ETL data for the given SRA id. pattern: "*/*.sra" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@Midnighter"