process DSHBIO_SPLITBED { tag "${meta.id}" label 'process_medium' conda (params.enable_conda ? "bioconda::dsh-bio=2.0.7" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/dsh-bio:2.0.7--hdfd78af_0' : 'quay.io/biocontainers/dsh-bio:2.0.7--hdfd78af_0' }" input: tuple val(meta), path(bed) output: tuple val(meta), path("*.bed.gz"), emit: bed path "versions.yml" , emit: versions script: def args = task.ext.args ?: '' def prefix = task.ext.prefix ?: "${meta.id}" """ dsh-bio \\ split-bed \\ $args \\ -p $prefix \\ -s '.bed.gz' \\ -i $bed cat <<-END_VERSIONS > versions.yml "${task.process}": dshbio: \$(dsh-bio --version 2>&1 | grep -o 'dsh-bio-tools .*' | cut -f2 -d ' ') END_VERSIONS """ }