def VERSION = '0.1.1' // Version information not provided by tool on CLI process HMMCOPY_MAPCOUNTER { label 'process_medium' conda (params.enable_conda ? "bioconda::hmmcopy=0.1.1" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/hmmcopy:0.1.1--h2e03b76_7': 'quay.io/biocontainers/hmmcopy:0.1.1--h2e03b76_7' }" input: path bigwig output: path "*.map.wig" , emit: wig path "versions.yml" , emit: versions script: def args = task.ext.args ?: '' """ mapCounter \\ $args \\ $bigwig > ${bigwig.baseName}.map.wig cat <<-END_VERSIONS > versions.yml "${task.process}": hmmcopy: \$(echo $VERSION) END_VERSIONS """ }