process TRANSDECODER_LONGORF { tag "$meta.id" label 'process_medium' conda (params.enable_conda ? "bioconda::transdecoder=5.5.0" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/transdecoder:5.5.0--pl5262hdfd78af_4' : 'quay.io/comp-bio-aging/transdecoder' }" input: tuple val(meta), path(fasta) output: tuple val(meta), path("${meta.id}/*.pep") , emit: pep tuple val(meta), path("${meta.id}/*.gff3"), emit: gff3 tuple val(meta), path("${meta.id}/*.cds") , emit: cds tuple val(meta), path("${meta.id}/*.dat") , emit: dat path("${meta.id}/") , emit: folder path "versions.yml" , emit: versions script: def args = task.ext.args ?: '' def prefix = task.ext.prefix ?: "${meta.id}" """ TransDecoder.LongOrfs \\ $args \\ -O $prefix \\ -t \\ $fasta cat <<-END_VERSIONS > versions.yml "${task.process}": transdecoder: \$(echo \$(TransDecoder.LongOrfs --version) | sed -e "s/TransDecoder.LongOrfs //g") END_VERSIONS """ }