name: raven
description: De novo genome assembler for long uncorrected reads.
keywords:
  - de novo
  - assembly
  - genome
  - genome assembler
  - long uncorrected reads
tools:
  - raven:
      description: Raven is a de novo genome assembler for long uncorrected reads.
      homepage: https://github.com/lbcb-sci/raven
      documentation: https://github.com/lbcb-sci/raven#usage
      tool_dev_url: https://github.com/lbcb-sci/raven
      doi: doi.org/10.1038/s43588-021-00073-4
      licence: ["MIT"]
input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', suffix:'bacteria' ]
  - reads:
      type: file
      description: Input file in FASTA/FASTQ format.
      pattern: "*.{fasta,fastq,fasta.gz,fastq.gz,fa,fq,fa.gz,fq.gz}"
output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', suffix:'bacteria' ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - fasta:
      type: file
      description: Assembled FASTA file
      pattern: "*.fasta.gz"
  - gfa:
      type: file
      description: Repeat graph
      pattern: "*.gfa.gz"

authors:
  - "@fmalmeida"