name: graphmap2_index
description: A versatile pairwise aligner for genomic and spliced nucleotide sequences
keywords:
  - index
  - fasta
  - reference
tools:
  - graphmap2:
      description: |
        A versatile pairwise aligner for genomic and spliced nucleotide sequences.
      homepage: https://github.com/lbcb-sci/graphmap2
      documentation: https://github.com/lbcb-sci/graphmap2#graphmap2---a-highly-sensitive-and-accurate-mapper-for-long-error-prone-reads
      licence: ["MIT"]
input:
  - fasta:
      type: file
      description: |
        Reference database in FASTA format.
output:
  - gmidx:
      type: file
      description: Graphmap2 fasta index in gmidx format
      pattern: "*.gmidx"
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
authors:
  - "@yuukiiwa"
  - "@drpatelh"