name: pairix description: | a tool for indexing and querying on a block-compressed text file containing pairs of genomic coordinates keywords: - index tools: - pairix: description: 2D indexing on bgzipped text files of paired genomic coordinates homepage: "https://github.com/4dn-dcic/pairix" documentation: "https://github.com/4dn-dcic/pairix" tool_dev_url: "https://github.com/4dn-dcic/pairix" doi: "" licence: ["MIT"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - pair: type: file description: pair file output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - index: type: file description: pair index file pattern: "*.px2" authors: - "@jianhong"