- name: bwameth align single-end test workflow
  command: nextflow run ./tests/modules/bwameth/align -entry test_bwameth_align_single_end -c ./tests/config/nextflow.config -c ./tests/modules/bwameth/align/nextflow.config
  tags:
    - bwameth
    - bwameth/align
  files:
    - path: output/bwameth/test.bam

- name: bwameth align paired-end test workflow
  command: nextflow run ./tests/modules/bwameth/align -entry test_bwameth_align_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/bwameth/align/nextflow.config
  tags:
    - bwameth
    - bwameth/align
  files:
    - path: output/bwameth/test.bam