- name: Run fastqc single-end test workflow
  command: nextflow run ./tests/software/fastqc/ -profile docker -entry test_single_end -c tests/config/nextflow.config
  tags:
    - fastqc
  files:
    - path: output/test_single_end/test_fastqc.html
    - path: output/test_single_end/test_fastqc.zip

- name: Run fastqc paired-end test workflow
  command: nextflow run ./tests/software/fastqc/ -profile docker -entry test_paired_end -c tests/config/nextflow.config
  tags:
    - fastqc
  files:
    - path: output/test_paired_end/test_1_fastqc.html
    - path: output/test_paired_end/test_2_fastqc.html
    - path: output/test_paired_end/test_1_fastqc.zip
    - path: output/test_paired_end/test_2_fastqc.zip