name: ucsc_bigwigaverageoverbed
description: compute average score of bigwig over bed file
keywords:
  - bigwig
  - bedGraph
tools:
  - ucsc:
      description: Compute average score of big wig over each bed, which may have introns.
      homepage: None
      documentation: None
      tool_dev_url: None
      doi: ""
      licence: ['varies; see http://genome.ucsc.edu/license']

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - bed:
      type: file
      description: bed file
      pattern: "*.{bed}"
  - bigwig:
      type: file
      description: bigwig file
      pattern: "*.{bigwig,bw}"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - version:
      type: file
      description: File containing software version
      pattern: "*.{version.txt}"
  - tab:
      type: file
      description: tab file
      pattern: "*.{tab}"

authors:
  - "@jianhong"