- name: damageprofiler
  command: nextflow run ./tests/modules/damageprofiler -entry test_damageprofiler -c tests/config/nextflow.config -dump-channels
  tags:
    - damageprofiler
  files:
    - path: output/damageprofiler/test/3p_freq_misincorporations.txt
      md5sum: da4cac90c78899a7cb6d72d415392b49
    - path: output/damageprofiler/test/3pGtoA_freq.txt
      md5sum: 8dab75d51a4b943b501d0995169c767f
    - path: output/damageprofiler/test/5pCtoT_freq.txt
      md5sum: fcc48ee5f72edff930d627c8bfdd8a5b
    - path: output/damageprofiler/test/5p_freq_misincorporations.txt
      md5sum: 54665474f5ef17dcc268567e5eaa7d86
    - path: output/damageprofiler/test/DamagePlot_five_prime.svg
    - path: output/damageprofiler/test/DamagePlot.pdf
    - path: output/damageprofiler/test/DamagePlot_three_prime.svg
    - path: output/damageprofiler/test/DamageProfiler.log
      contains:
        - "FINISHED SUCCESSFULLY"
    - path: output/damageprofiler/test/dmgprof.json
      md5sum: 98499024c7e937896e481f2d3cfbdd3e
    - path: output/damageprofiler/test/DNA_comp_genome.txt
      md5sum: f91e70760d91a1193a27e360aaddf2fd
    - path: output/damageprofiler/test/DNA_composition_sample.txt
      md5sum: 1257eb3eb42484647bfba2151f9ef04f
    - path: output/damageprofiler/test/edit_distance.pdf
    - path: output/damageprofiler/test/edit_distance.svg
    - path: output/damageprofiler/test/editDistance.txt
      md5sum: af2d2f4a99058ec56eae88ec27779e38
    - path: output/damageprofiler/test/Length_plot_combined_data.svg
    - path: output/damageprofiler/test/Length_plot_forward_reverse_separated.svg
    - path: output/damageprofiler/test/Length_plot.pdf
    - path: output/damageprofiler/test/lgdistribution.txt
      md5sum: c5d029bf3a92b613310ee23f47d94981
    - path: output/damageprofiler/test/misincorporation.txt
      md5sum: 3aa6dd749010a492d92a815a83c196a8