- name: spades single end
  command: nextflow run ./tests/modules/spades -entry test_spades_single_end -c tests/config/nextflow.config
  tags:
    - spades
  files:
    - path: output/spades/test.assembly.gfa
      md5sum: b2616d2beba83ab7d361b54778d1e759
    - path: output/spades/test.contigs.fa
      md5sum: 2690fefde046bc904e90df09a065257a
    - path: output/spades/test.scaffolds.fa
      md5sum: 2690fefde046bc904e90df09a065257a
    - path: output/spades/test.spades.log

- name: spades paired end
  command: nextflow run ./tests/modules/spades -entry test_spades_paired_end -c tests/config/nextflow.config
  tags:
    - spades
  files:
    - path: output/spades/test.assembly.gfa
      md5sum: faf76135ee390606b899c0197dc38e04
    - path: output/spades/test.contigs.fa
      md5sum: 6148e25b33890c80f176f90f2dd88989
    - path: output/spades/test.spades.log