name: seqtk_subseq description: Select only sequences that match the filtering condition keywords: - filtering,selection tools: - seqtk: description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format homepage: https://github.com/lh3/seqtk documentation: https://docs.csc.fi/apps/seqtk/ tool_dev_url: https://github.com/lh3/seqtk licence: ['MIT'] input: - sequences: type: file description: FASTQ/FASTA file pattern: "*.{fq,fq.gz,fa,fa.gz}" - filter_list: type: file description: BED file or a text file with a list of sequence names pattern: "*.{bed,lst}" output: - version: type: file description: File containing software version pattern: "versions.yml" - sequences: type: file description: FASTQ/FASTA file pattern: "*.{fq.gz,fa.gz}" authors: - "@sidorov-si"