- name: picard liftovervcf test_picard_liftovervcf
  command: nextflow run tests/modules/picard/liftovervcf -entry test_picard_liftovervcf -c tests/config/nextflow.config
  tags:
    - picard/liftovervcf
    - picard
  files:
    - path: output/picard/test.lifted.vcf.gz
      contains:
        - "chr22"
    - path: output/picard/test.unlifted.vcf.gz
    - path: output/picard/versions.yml

- name: picard liftovervcf test_picard_liftovervcf_stubs
  command: nextflow run tests/modules/picard/liftovervcf -entry test_picard_liftovervcf_stubs -c tests/config/nextflow.config -stub-run
  tags:
    - picard/liftovervcf
    - picard
  files:
    - path: output/picard/test.lifted.vcf.gz
    - path: output/picard/test.unlifted.vcf.gz
    - path: output/picard/versions.yml