- name: sratools fasterqdump test_sratools_fasterqdump_single_end_with_input
  command: nextflow run ./tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_single_end_with_input -c ./tests/config/nextflow.config -c ./tests/modules/sratools/fasterqdump/nextflow.config
  tags:
    - sratools
    - sratools/fasterqdump
  files:
    - path: output/sratools/SRR13255544.fastq.gz
      md5sum: 1054c7b71884acdb5eed8a378f18be82
    - path: output/untar/SRR13255544/SRR13255544.sra
      md5sum: 466d05dafb2eec672150754168010b4d
    - path: output/sratools/versions.yml
      contains:
        - "sratools: 2.11.0"

- name: sratools fasterqdump test_sratools_fasterqdump_paired_end_with_input
  command: nextflow run ./tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_paired_end_with_input -c ./tests/config/nextflow.config -c ./tests/modules/sratools/fasterqdump/nextflow.config
  tags:
    - sratools
    - sratools/fasterqdump
  files:
    - path: output/sratools/SRR11140744_1.fastq.gz
      md5sum: 193809c784a4ea132ab2a253fa4f55b6
    - path: output/sratools/SRR11140744_2.fastq.gz
      md5sum: 3e3b3af3413f50a1685fd7b3f1456d4e
    - path: output/untar/SRR11140744/SRR11140744.sra
      md5sum: 065666caf5b2d5dfb0cb25d5f3abe659
    - path: output/sratools/versions.yml
      contains:
        - "sratools: 2.11.0"

- name: sratools fasterqdump test_sratools_fasterqdump_single_end_without_input
  command: nextflow run ./tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_single_end_without_input -c ./tests/config/nextflow.config -c ./tests/modules/sratools/fasterqdump/nextflow_mount.config
  tags:
    - sratools
    - sratools/fasterqdump
  files:
    - path: output/sratools/SRR13255544.fastq.gz
      md5sum: 1054c7b71884acdb5eed8a378f18be82
    - path: output/untar/SRR13255544/SRR13255544.sra
      md5sum: 466d05dafb2eec672150754168010b4d
    - path: output/sratools/versions.yml
      contains:
        - "sratools: 2.11.0"

- name: sratools fasterqdump test_sratools_fasterqdump_paired_end_without_input
  command: nextflow run ./tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_paired_end_without_input -c ./tests/config/nextflow.config -c ./tests/modules/sratools/fasterqdump/nextflow_mount.config
  tags:
    - sratools
    - sratools/fasterqdump
  files:
    - path: output/sratools/SRR11140744_1.fastq.gz
      md5sum: 193809c784a4ea132ab2a253fa4f55b6
    - path: output/sratools/SRR11140744_2.fastq.gz
      md5sum: 3e3b3af3413f50a1685fd7b3f1456d4e
    - path: output/untar/SRR11140744/SRR11140744.sra
      md5sum: 065666caf5b2d5dfb0cb25d5f3abe659
    - path: output/sratools/versions.yml
      contains:
        - "sratools: 2.11.0"