#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { RAXMLNG as RAXMLNG_NO_BOOTSTRAP } from '../../../modules/raxmlng/main.nf' addParams( options: [args:'--model GTR+G']                 )
include { RAXMLNG as RAXMLNG_BOOTSTRAP    } from '../../../modules/raxmlng/main.nf' addParams( options: [args:'--all --model GTR+G --bs-trees 1000'] )

//
// Test without bootstrapping
//
workflow test_raxmlng_no_bootstrap {

    input = [ file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]

    RAXMLNG_NO_BOOTSTRAP ( input )
}

//
// Test with bootstrapping
//
workflow test_raxmlng_bootstrap {

    input = [ file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]

    RAXMLNG_BOOTSTRAP ( input )
}