process FASTK_HISTEX { tag "$meta.id" label 'process_low' if (params.enable_conda) { error "Conda environments cannot be used when using the FastK tool. Please use docker or singularity containers." } // WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions. container 'ghcr.io/nbisweden/fastk_genescopefk_merquryfk:1.0' input: tuple val(meta), path(histogram) output: tuple val(meta), path("*.hist"), emit: hist path "versions.yml" , emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' def prefix = task.ext.prefix ?: "${meta.id}" def FASTK_VERSION = 'f18a4e6d2207539f7b84461daebc54530a9559b0' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions. """ Histex \\ $args \\ $histogram \\ > ${prefix}.hist cat <<-END_VERSIONS > versions.yml "${task.process}": fastk: $FASTK_VERSION END_VERSIONS """ }