name: bcftools_concat description: Concatenate VCF files keywords: - variant calling - concat - bcftools - VCF tools: - concat: description: | Concatenate VCF files. homepage: http://samtools.github.io/bcftools/bcftools.html documentation: http://www.htslib.org/doc/bcftools.html doi: 10.1093/bioinformatics/btp352 licence: ["MIT"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - vcfs: type: files description: | List containing 2 or more vcf files e.g. [ 'file1.vcf', 'file2.vcf' ] - tbi: type: files description: | List containing 2 or more index files (optional) e.g. [ 'file1.tbi', 'file2.tbi' ] output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - vcf: type: file description: VCF concatenated output file pattern: "*.{vcf.gz}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@abhi18av"