name: pairtools_restrict description: Assign restriction fragments to pairs keywords: - sort tools: - pairtools: description: CLI tools to process mapped Hi-C data homepage: http://pairtools.readthedocs.io/ documentation: http://pairtools.readthedocs.io/ tool_dev_url: https://github.com/mirnylab/pairtools doi: "" licence: ["MIT"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - pairs: type: file description: pairs file - frag: type: file description: | a tab-separated BED file with the positions of restriction fragments (chrom, start, end). Can be generated using cooler digest. output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - restrict: type: file description: Filtered pairs file pattern: "*.{pairs.gz}" authors: - "@jianhong"