- name: bracken bracken test_bracken_bracken_single_end_default_args
  command: nextflow run tests/modules/bracken/bracken -entry test_bracken_bracken_single_end_default_args -c tests/config/nextflow.config
  tags:
    - bracken/bracken
    - bracken
  files:
    - path: output/bracken/test_S.tsv
      md5sum: 4a21ae14ff8a0311d55f139af5247838
    - path: output/bracken/versions.yml
      md5sum: ab8b1550f84a99bae80f050fe718abd0

- name: bracken bracken test_bracken_bracken_single_end_custom_args
  command: nextflow run tests/modules/bracken/bracken -entry test_bracken_bracken_single_end_custom_args -c tests/config/nextflow.config
  tags:
    - bracken/bracken
    - bracken
  files:
    - path: output/bracken/test_G.tsv
      md5sum: f609b09d6edb5ebc1ea1435d1dd46cde
    - path: output/bracken/versions.yml
      md5sum: af87e8d4c42fbcb0469ab13912b8a9bd

- name: bracken bracken test_bracken_bracken_paired_end_default_args
  command: nextflow run tests/modules/bracken/bracken -entry test_bracken_bracken_paired_end_default_args -c tests/config/nextflow.config
  tags:
    - bracken/bracken
    - bracken
  files:
    - path: output/bracken/test_S.tsv
      md5sum: 4a21ae14ff8a0311d55f139af5247838
    - path: output/bracken/versions.yml
      md5sum: 4602111eb25bd19a7f9d725acc5921f6

- name: bracken bracken test_bracken_bracken_paired_end_custom_args
  command: nextflow run tests/modules/bracken/bracken -entry test_bracken_bracken_paired_end_custom_args -c tests/config/nextflow.config
  tags:
    - bracken/bracken
    - bracken
  files:
    - path: output/bracken/test_G.tsv
      md5sum: f609b09d6edb5ebc1ea1435d1dd46cde
    - path: output/bracken/versions.yml
      md5sum: d4618b01df5ac09cc366fe2ae7c13f06