name: cnvpytor_callcnvs description: command line tool for calling CNVs in whole genome sequencing data - CNV calling tools: - cnvpytor: description: calling CNVs using read depth homepage: https://github.com/abyzovlab/CNVpytor documentation: https://github.com/abyzovlab/CNVpytor tool_dev_url: https://github.com/abyzovlab/CNVpytor doi: "10.1101/2021.01.27.428472v1" licence: ["MIT"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test'] - pytor: type: file description: cnvpytor root file pattern: "*.{pytor}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test' ] - cnvs: type: file description: file containing identified copy numer variations pattern: "*.{tsv}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@sima-r"