- name: cutadapt single-end
  command: nextflow run ./tests/modules/cutadapt -entry test_cutadapt_single_end -c ./tests/config/nextflow.config -c ./tests/modules/cutadapt/nextflow.config
  tags:
    - cutadapt
  files:
    - path: ./output/cutadapt/test.cutadapt.log
    - path: ./output/cutadapt/test.trim.fastq.gz

- name: cutadapt paired-end
  command: nextflow run ./tests/modules/cutadapt -entry test_cutadapt_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/cutadapt/nextflow.config
  tags:
    - cutadapt
  files:
    - path: ./output/cutadapt/test.cutadapt.log
    - path: ./output/cutadapt/test_1.trim.fastq.gz
    - path: ./output/cutadapt/test_2.trim.fastq.gz