- name: prinseqplusplus test_prinseqplusplus_single_end
  command: nextflow run tests/modules/prinseqplusplus -entry test_prinseqplusplus_single_end -c tests/config/nextflow.config
  tags:
    - prinseqplusplus
  files:
    - path: output/prinseqplusplus/test.log
      contains:
        - "reads removed by -lc_entropy"
    - path: output/prinseqplusplus/test_bad_out.fastq.gz
    - path: output/prinseqplusplus/test_good_out.fastq.gz
    - path: output/prinseqplusplus/versions.yml

- name: prinseqplusplus test_prinseqplusplus_paired_end
  command: nextflow run tests/modules/prinseqplusplus -entry test_prinseqplusplus_paired_end -c tests/config/nextflow.config
  tags:
    - prinseqplusplus
  files:
    - path: output/prinseqplusplus/test.log
      contains:
        - "reads removed by -lc_entropy"
    - path: output/prinseqplusplus/test_bad_out_R1.fastq.gz
    - path: output/prinseqplusplus/test_bad_out_R2.fastq.gz
    - path: output/prinseqplusplus/test_good_out_R1.fastq.gz
    - path: output/prinseqplusplus/test_good_out_R2.fastq.gz
    - path: output/prinseqplusplus/test_single_out_R1.fastq.gz
    - path: output/prinseqplusplus/test_single_out_R2.fastq.gz
    - path: output/prinseqplusplus/versions.yml