- name: strelka somatic test_strelka_somatic
  command: nextflow run ./tests/modules/strelka/somatic -entry test_strelka_somatic -c ./tests/config/nextflow.config -c ./tests/modules/strelka/somatic/nextflow.config
  tags:
    - strelka
    - strelka/somatic
  files:
    - path: output/strelka/test.somatic_indels.vcf.gz
    - path: output/strelka/test.somatic_indels.vcf.gz.tbi
    - path: output/strelka/test.somatic_snvs.vcf.gz
    - path: output/strelka/test.somatic_snvs.vcf.gz.tbi

- name: strelka somatic test_strelka_best_practices_somatic
  command: nextflow run ./tests/modules/strelka/somatic -entry test_strelka_best_practices_somatic -c ./tests/config/nextflow.config -c ./tests/modules/strelka/somatic/nextflow.config
  tags:
    - strelka
    - strelka/somatic
  files:
    - path: output/strelka/test.somatic_indels.vcf.gz
    - path: output/strelka/test.somatic_indels.vcf.gz.tbi
    - path: output/strelka/test.somatic_snvs.vcf.gz
    - path: output/strelka/test.somatic_snvs.vcf.gz.tbi