name: seqtk_sample description: Subsample reads from FASTQ files keywords: - sample tools: - seqtk: description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk sample command subsamples sequences. homepage: https://github.com/lh3/seqtk documentation: https://docs.csc.fi/apps/seqtk/ tool_dev_url: https://github.com/lh3/seqtk licence: ["MIT"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - reads: type: file description: List of input FastQ files of size 1 and 2 for single-end and paired-end data,respectively. pattern: "*.{fastq.gz}" - sample_size: type: value description: Number of reads to sample. output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - reads: type: file description: Subsampled FastQ files, 1 for single-end data or 2 for paired-end data. pattern: "*.{fastq.gz}" authors: - "@kaurravneet4123" - "@sidorov-si"