- name: Run fastqc single-end test workflow
  command: nextflow run ./software/fastqc/test/ -profile docker -entry test_single_end
  tags:
    - fastqc
  files:
    - path: output/test_single_end/test_fastqc.html
      md5sum: d4d3d600c8dc4024c05b531c2920659a
    - path: output/test_single_end/test_fastqc.zip

- name: Run fastqc paired-end test workflow
  command: nextflow run ./software/fastqc/test/ -profile docker -entry test_paired_end
  tags:
    - fastqc
  files:
    - path: output/test_paired_end/test_1_fastqc.html
      md5sum: fb13b04d87d4f8b5078c0d92f6ef2d06
    - path: output/test_paired_end/test_2_fastqc.html
      md5sum: d1e3f410e15df9612dc2c17e39f5253d
    - path: output/test_paired_end/test_1_fastqc.zip
    - path: output/test_paired_end/test_2_fastqc.zip