name: FastQC
description: Run FastQC on sequenced reads
keywords:
    - Quality Control
    - QC
    - Adapters
tools:
    - fastqc:
        description: |
            FastQC gives general quality metrics about your reads.
            It provides information about the quality score distribution
            across your reads, the per base sequence content (%A/C/G/T).
            You get information about adapter contamination and other
            overrepresented sequences.
        homepage: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
        documentation: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/
input:
    -
        - name:
            type: string
            description: Sample identifier
        - reads:
            type: file
            description: Input FastQ file, or pair of files
output:
    -
        - report:
            type: file
            description: FastQC report
            pattern: "*_fastqc.{zip,html}"
authors:
    - "@ewels"
    - "@FelixKrueger"