name: gatk4_revertsam description: Reverts SAM or BAM files to a previous state. keywords: - sam - revert tools: - gatk4: description: | Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. homepage: https://gatk.broadinstitute.org/hc/en-us documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s doi: 10.1158/1538-7445.AM2017-3590 input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test'] - bam: type: file description: The input bam/sam file pattern: "*.{bam,sam}" output: - bam: type: file description: The reverted bam/sam file pattern: "*.reverted.bam" - version: type: file description: File containing software version pattern: "*.version.txt" authors: - "@kevinmenden"