- name: bwa mem single-end
  command: nextflow run ./tests/software/bwa/mem -entry test_bwa_mem_single_end -c tests/config/nextflow.config
  tags:
    - bwa
    - bwa_mem
    - bwa_mem_single_end
  files:
    - path: output/bwa/test.bam
      md5sum: 3ee21210bac387e0335008146e4728bc

- name: bwa mem paired-end
  command: nextflow run ./tests/software/bwa/mem -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
  tags:
    - bwa
    - bwa_mem
    - bwa_mem_paired_end
  files:
    - path: output/bwa/test.bam
      md5sum: 510d8acc6448c07cdacce8e64ec0904c