- name: stringtie merge forward-strand
  command: nextflow run tests/modules/stringtie/merge -entry test_stringtie_forward_merge -c tests/config/nextflow.config
  tags:
    - stringtie
    - stringtie/merge
  files:
    - path: output/stringtie/stringtie.merged.gtf
      md5sum: 9fab7049ef2eafdea246fc787d1def40
    - path: output/stringtie/test.ballgown/e2t.ctab
      md5sum: 9ae42e056c955a88a883e5e917840d77
    - path: output/stringtie/test.ballgown/e_data.ctab
      md5sum: adbedee7b2f84c70362ad6dfa57442b7
    - path: output/stringtie/test.ballgown/i2t.ctab
      md5sum: 658131af118cfb416939044fdb5411de
    - path: output/stringtie/test.ballgown/i_data.ctab
      md5sum: f01d94a7d0dcfad3bfab18ed50dad16c
    - path: output/stringtie/test.ballgown/t_data.ctab
      md5sum: 92a98902784e7406ffe054d2adbabc7c
    - path: output/stringtie/test.coverage.gtf
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/stringtie/test.gene.abundance.txt
      md5sum: 9708811bcefe0f6384293d6f419f3250
    - path: output/stringtie/test.transcripts.gtf
      md5sum: 0e42709bfe30c2c7f2574ba664f5fa9f

- name: stringtie merge test_stringtie_reverse_merge
  command: nextflow run tests/modules/stringtie/merge -entry test_stringtie_reverse_merge -c tests/config/nextflow.config
  tags:
    - stringtie
    - stringtie/merge
  files:
    - path: output/stringtie/stringtie.merged.gtf
      md5sum: afc461bb3cbc368f268a7a45c1b54497
    - path: output/stringtie/test.ballgown/e2t.ctab
      md5sum: 9ae42e056c955a88a883e5e917840d77
    - path: output/stringtie/test.ballgown/e_data.ctab
      md5sum: fd8496d3957ade3b2c0853155f9a67da
    - path: output/stringtie/test.ballgown/i2t.ctab
      md5sum: 658131af118cfb416939044fdb5411de
    - path: output/stringtie/test.ballgown/i_data.ctab
      md5sum: f01d94a7d0dcfad3bfab18ed50dad16c
    - path: output/stringtie/test.ballgown/t_data.ctab
      md5sum: 92a98902784e7406ffe054d2adbabc7c
    - path: output/stringtie/test.coverage.gtf
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/stringtie/test.gene.abundance.txt
      md5sum: 94b85145d60ab1b80a7f0f6cf08418b0
    - path: output/stringtie/test.transcripts.gtf
      md5sum: 3196e3d50fd461aae6408e0a70acae68