- name: samtools flagstat
  command: nextflow run ./tests/software/samtools/flagstat -entry test_samtools_flagstat -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools_flagstat
  files:
    - path: ./output/samtools/test_paired_end.sorted.bam.flagstat
      md5sum: 6d7934c303b15ce473f64d502b79984e