- name: plasmidid
  command: nextflow run ./tests/software/plasmidid -entry test_plasmidid -c tests/config/nextflow.config
  tags:
    - plasmidid
  files:
    - path: output/plasmidid/test/data/database_reconstruct_test.length
      md5sum: a57c401f27ae5133823fb09fb21c8a3c
    - path: output/plasmidid/test/data/test.coverage_adapted_clustered_ac
      md5sum: 3a9ea6d336e113a74d7fdca5e7b623fc
    - path: output/plasmidid/test/data/test.err
      md5sum: 1eabbbcb19d8886182f78b86fc50884c
    - path: output/plasmidid/test/data/test.fna
      md5sum: 78328536870d04afc54a4dfaf103cac8
    - path: output/plasmidid/test/data/test.gbk
      md5sum: acc40ebd7864b84fc14e5ad22e30f83f
    - path: output/plasmidid/test/data/test.gff
      md5sum: 0dd7015f77e2fc3ecaa978362f7334cb
    - path: output/plasmidid/test/data/test.karyotype_individual.txt
      md5sum: aaf0f5bfe297fb9846ace761ff018d22
    - path: output/plasmidid/test/data/test.karyotype_summary.txt
      md5sum: aaf0f5bfe297fb9846ace761ff018d22
    - path: output/plasmidid/test/data/test.plasmids.blast
      md5sum: b089b7a073f4e48fabf0949168581b4c
    - path: output/plasmidid/test/data/test.plasmids.blast.links
      md5sum: 3528f4e0a046826a9b7f916838b086c6
    - path: output/plasmidid/test/data/test.plasmids.complete
      md5sum: 8d30d205c471ee3c8151b4c3d90e753b
    - path: output/plasmidid/test/database/test.fna
      md5sum: 6b843fe652b4369addb382f61952c3dd
    - path: output/plasmidid/test/database/test.gbk
      md5sum: d2e24369b999bc6a0dae9b7612edb839
    - path: output/plasmidid/test/database/test.gff
      md5sum: 7e65da147d0a413020b0d92b7b03ffcd
    - path: output/plasmidid/test/fasta_files/MT192765.1_term.fasta
      md5sum: 2387d7d9c861e6f6e7d9f9395f9bad5c
    - path: output/plasmidid/test/images/test_individual.circos.conf
      md5sum: f74467ab77232e2b342e2bd408897b12
    - path: output/plasmidid/test/images/test_MT192765.1_individual.circos.conf
      md5sum: 548443ba0a68065a69383fe32b226780
    - path: output/plasmidid/test/images/test_summary.circos.conf
      md5sum: e59dc3b77ee610a48b79230da705aba0
    - path: output/plasmidid/test/images/test_MT192765.1.png
    - path: output/plasmidid/test/images/test_summary.png
    - path: output/plasmidid/test/kmer/database.filtered_0.8_term.0.5.clusters.tab
      md5sum: cf75e4418631796bb4675129b575915d
    - path: output/plasmidid/test/kmer/database.filtered_0.8_term.0.5.clusters.tab
      md5sum: cf75e4418631796bb4675129b575915d
    - path: output/plasmidid/test/kmer/database.filtered_0.8_term.0.5.representative.fasta
      md5sum: 483f4a5dfe60171c86ee9b7e6dff908b
    - path: output/plasmidid/test/kmer/database.filtered_0.8_term.0.5.representative.fasta.blast.tmp.ndb
      md5sum: f67f8be1e00eb7d3512869071fb4c2c2
    - path: output/plasmidid/test/kmer/database.filtered_0.8_term.fasta
      md5sum: c7fe0e9e9a94d98d7f85a7be99c032fd
    - path: output/plasmidid/test/kmer/database.filtered_0.8_term.mash.distances.tab
      md5sum: fd5408c3c2f8f68dc01e0123bb6a9079
    - path: output/plasmidid/test/logs/draw_circos_images.log
    - path: output/plasmidid/test/logs/plasmidID.log
    - path: output/plasmidid/test/test_final_results.html
    - path: output/plasmidid/test/test_final_results.tab