- name: centrifuge test_centrifuge_single_end
  command: nextflow run tests/modules/centrifuge -entry test_centrifuge_single_end -c tests/config/nextflow.config
  tags:
    - centrifuge
  files:
    - path: output/centrifuge/test.kreport.txt
    - path: output/centrifuge/test.report.txt
    - path: output/centrifuge/test.results.txt
    - path: output/centrifuge/test.unmapped.fastq.gz
    - path: output/centrifuge/versions.yml

- name: centrifuge test_centrifuge_paired_end
  command: nextflow run tests/modules/centrifuge -entry test_centrifuge_paired_end -c tests/config/nextflow.config
  tags:
    - centrifuge
  files:
    - path: output/centrifuge/test.kreport.txt
    - path: output/centrifuge/test.report.txt
    - path: output/centrifuge/test.results.txt
    - path: output/centrifuge/test.unmapped.fastq.1.gz
    - path: output/centrifuge/test.unmapped.fastq.2.gz
    - path: output/centrifuge/versions.yml