- name: bwa mem single-end
  command: nextflow run ./tests/software/bwa -entry test_bwa_mem_single_end -c tests/config/nextflow.config
  tags:
    - bwa
    - bwa_mem
    - bwa_mem_single_end
  files:
    - path: output/test_single_end/test.bam
      md5sum: 3ee21210bac387e0335008146e4728bc

- name: bwa mem paired-end
  command: nextflow run ./tests/software/bwa -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
  tags:
    - bwa
    - bwa_mem
    - bwa_mem_paired_end
  files:
    - path: output/test_paired_end/test.bam
      md5sum: 510d8acc6448c07cdacce8e64ec0904c