- name: fastqc single-end
  command: nextflow run ./tests/software/fastqc/ -entry test_fastqc_single_end -c tests/config/nextflow.config
  tags:
    - fastqc
    - fastqc_single_end
  files:
    - path: output/test_single_end/test_fastqc.html
    - path: output/test_single_end/test_fastqc.zip

- name: fastqc paired-end
  command: nextflow run ./tests/software/fastqc/ -entry test_fastqc_paired_end -c tests/config/nextflow.config
  tags:
    - fastqc
    - fastqc_paired_end
  files:
    - path: output/test_paired_end/test_1_fastqc.html
    - path: output/test_paired_end/test_2_fastqc.html
    - path: output/test_paired_end/test_1_fastqc.zip
    - path: output/test_paired_end/test_2_fastqc.zip