- name: salmon index
  command: nextflow run ./tests/software/salmon -entry test_salmon_index -c tests/config/nextflow.config
  tags:
    - salmon
    - salmon_index
  files:
    - path: ./output/salmon/salmon/info.json
      md5sum: 61ff4d3471134c280668355ddd39e99f
    - path: ./output/salmon/salmon/mphf.bin
      md5sum: 53669a47610e33e031faafd32703b714
    - path: ./output/salmon/salmon/complete_ref_lens.bin
      md5sum: f57562f1fca3ae7b133f895ae13c3d08
    - path: ./output/salmon/salmon/ref_indexing.log
    - path: ./output/salmon/salmon/versionInfo.json
      md5sum: 204865f645102587c4953fccb256797c
    - path: ./output/salmon/salmon/seq.bin
    - path: ./output/salmon/salmon/pre_indexing.log
    - path: ./output/salmon/salmon/rank.bin
      md5sum: 3f34dca1ec26cdf89a6d19b1d1c07e71
    - path: ./output/salmon/salmon/reflengths.bin
      md5sum: f57562f1fca3ae7b133f895ae13c3d08
    - path: ./output/salmon/salmon/ctable.bin
    - path: ./output/salmon/salmon/ctg_offsets.bin
      md5sum: 27a76542337df436436e66017f66dd25
    - path: ./output/salmon/salmon/pos.bin
    - path: ./output/salmon/salmon/duplicate_clusters.tsv
      md5sum: 51b5292e3a874119c0e1aa566e95d70c
    - path: ./output/salmon/salmon/refAccumLengths.bin
      md5sum: 8d1970505b2b08ca0eb5ff7722b48cde
    - path: ./output/salmon/salmon/refseq.bin
      md5sum: 79c4ddf34be3a98d5a7b9d153629a6f7