Jose Espinosa-Carrasco 572abb00b3 Remove def from module options definition in main (#270) ... * Remove def from module options definition in main * Fix bismark_deduplicate tests * Fix bwameth_align tests * Fixing gatk4 conda tests ("=" instead of ':' in build id) * Same as previous commit (Fix gatk4 test) * Fix qualimap bamqc test (no md5 check for pngs) * Fix seqkit split2 tests. Changed to new test data * Fix samtools tests. Some were missing initOptions include * Removing TOOL SUBTOOL template module since now it is included on tools repo		2021-03-15 12:16:43 +00:00
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bedtointervallist	Remove def from module options definition in main (#270)	2021-03-15 12:16:43 +00:00
createsequencedictionary	Remove def from module options definition in main (#270)	2021-03-15 12:16:43 +00:00
mergevcfs	Remove def from module options definition in main (#270)	2021-03-15 12:16:43 +00:00
revertsam	Remove def from module options definition in main (#270)	2021-03-15 12:16:43 +00:00
samtofastq	Remove def from module options definition in main (#270)	2021-03-15 12:16:43 +00:00
splitncigarreads	Remove def from module options definition in main (#270)	2021-03-15 12:16:43 +00:00