FriederikeHanssen 19035c99d1 Add thread option to samtools modules (#1069) ... * add thread option to samtools modules * fix tests * fix tests * fix tests * Fix naming to fix tests * cpus-1 to account for mainthread * remove thread in ampliconclip, docu doesn't report this param * add -1 to all other applicable samtools modules * Update samtools version * Update checksums * retrigger GHA after update * Update modules/samtools/fastq/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/fixmate/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/flagstat/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/index/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/merge/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/stats/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/view/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Fix md5sum fixmate * Fix md5sums * sth funny with the fixmate checksums * more md5sums updates Co-authored-by: Patrick Hüther <patrick.huether@gmail.com>		2021-11-18 22:24:47 +01:00
..
align_bowtie2	Add thread option to samtools modules (#1069)	2021-11-18 22:24:47 +01:00
bam_sort_samtools	Add thread option to samtools modules (#1069)	2021-11-18 22:24:47 +01:00
bam_stats_samtools	Subworkflow Infrastructure (#662)	2021-10-08 16:02:42 +01:00
gatk_create_som_pon	Fix subworkflows seperate from modules (#933)	2021-11-15 18:18:46 +00:00
gatk_tumor_normal_somatic_variant_calling	Add gatk somatic paired calling subworkflow (#1067)	2021-11-17 11:34:07 +01:00
gatk_tumor_only_somatic_variant_calling	Add gatk somatic tumour calling subworkflow (#1064)	2021-11-17 11:07:17 +01:00
sra_fastq	feat: add sub-workflow for SRA (#836)	2021-10-14 11:50:31 +02:00