mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 11:08:17 +00:00
3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
51 lines
1.2 KiB
YAML
51 lines
1.2 KiB
YAML
name: bcftools_reheader
|
|
description: Reheader a VCF file
|
|
keywords:
|
|
- reheader
|
|
- vcf
|
|
- update header
|
|
tools:
|
|
- reheader:
|
|
description: |
|
|
Modify header of VCF/BCF files, change sample names.
|
|
homepage: http://samtools.github.io/bcftools/bcftools.html
|
|
documentation: http://samtools.github.io/bcftools/bcftools.html#reheader
|
|
doi: 10.1093/gigascience/giab008
|
|
licence: ['MIT']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcf:
|
|
type: file
|
|
description: VCF/BCF file
|
|
pattern: "*.{vcf.gz,vcf,bcf}"
|
|
- fai:
|
|
type: file
|
|
description: Fasta index to update header sequences with
|
|
pattern: "*.{fai}"
|
|
- header:
|
|
type: file
|
|
description: New header to add to the VCF
|
|
pattern: "*.{header.txt}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- vcf:
|
|
type: file
|
|
description: VCF with updated header
|
|
pattern: "*.{vcf.gz}"
|
|
|
|
authors:
|
|
- "@bjohnnyd"
|