mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 11:08:17 +00:00
34 lines
969 B
YAML
34 lines
969 B
YAML
name: iqtree
|
|
description: Produces a Newick format phylogeny from a multiple sequence alignment using the maxium likelihood algorithm. Capable of bacterial genome size alignments.
|
|
keywords:
|
|
- phylogeny
|
|
- newick
|
|
- maximum likelihood
|
|
tools:
|
|
- iqtree:
|
|
description: Efficient phylogenomic software by maximum likelihood.
|
|
homepage: http://www.iqtree.org
|
|
documentation: http://www.iqtree.org/doc
|
|
tool_dev_url: https://github.com/iqtree/iqtree2
|
|
doi: doi.org/10.1093/molbev/msaa015
|
|
licence: ['GPL v2-or-later']
|
|
|
|
input:
|
|
- alignment:
|
|
type: file
|
|
description: A FASTA format multiple sequence alignment file
|
|
pattern: "*.{fasta,fas,fa,mfa}"
|
|
|
|
output:
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- phylogeny:
|
|
type: file
|
|
description: A phylogeny in Newick format
|
|
pattern: "*.{treefile}"
|
|
|
|
authors:
|
|
- "@avantonder"
|
|
- "@aunderwo"
|