Edmund Miller e2ba70ed9a Add Cell Ranger mkfastq, mkgtf, and count (#979) ... * feat(cellranger): Add initial count module Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com> * feat(cellranger): Add mkgtf module * test(cellranger): Fix count test with mkgtf * fix(cellranger): Generalize gtf attribute filters * chore: Add .gitignore for cellranger tar * build(cellranger): Update dockerfile https://joshtronic.com/2021/09/12/fixed-repository-debian-security-buster-updates-changed-suite-from-stable-to-oldstable/ * Apply suggestions from code review Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/cellranger/mkgtf/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * style: Capitalize README * test(cellranger): Update pytest_modules * feat(cellranger): Add initial mkfastq module * ci: Update pytest modules * refactor(cellranger): Update modules to new syntax * docs(cellranger): Update meta files There is some terrible copy-pasting going on. * fix(cellranger): Add args Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>		2021-12-02 14:27:20 +00:00
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count	Add Cell Ranger mkfastq, mkgtf, and count (#979)	2021-12-02 14:27:20 +00:00
mkfastq	Add Cell Ranger mkfastq, mkgtf, and count (#979)	2021-12-02 14:27:20 +00:00
mkgtf	Add Cell Ranger mkfastq, mkgtf, and count (#979)	2021-12-02 14:27:20 +00:00
mkref	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00