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https://github.com/MillironX/nf-core_modules.git
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90aef30f43
* Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
41 lines
1.3 KiB
Text
41 lines
1.3 KiB
Text
process AMPLIFY_PREDICT {
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tag "$meta.id"
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label 'process_single'
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// WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions.
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conda (params.enable_conda ? "bioconda::amplify=1.0.3" : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/amplify:1.0.3--py36hdfd78af_0':
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'quay.io/biocontainers/amplify:1.0.3--py36hdfd78af_0' }"
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input:
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tuple val(meta), path(faa)
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path(model_dir)
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output:
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tuple val(meta), path('*.tsv'), emit: tsv
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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script:
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def args = task.ext.args ?: ''
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def prefix = task.ext.prefix ?: "${meta.id}"
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def custom_model_dir = model_dir ? "-md ${model_dir}" : ""
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def VERSION = '1.0.3' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
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"""
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AMPlify \\
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$args \\
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${custom_model_dir} \\
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-s '${faa}'
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#rename output, because tool includes date and time in name
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mv *.tsv ${prefix}.tsv
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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AMPlify: $VERSION
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END_VERSIONS
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"""
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}
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