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new-module/EMBOSS_SEQRET
master
krakentools/kreport2krona
bugfix/cat/fastq/single-file
seqtk/seq-indent-fix
mafft-module
mafft
nickhsmith-patch-1
pileup
preseq
rpetit3-patch-1
fix-yaml-formatting
bat-test
grst-patch-1
skip-subworkflows
elixir
subworkflow-launch
samtools
tkhalilullah/issue946
spaceranger
unifiedgenotyper
nanopolish
circularmapper
jfnavarro-patch-1
ci-cache
greater-than-256
revert-343-master
appyter
editorconfig-newline
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nf-core_modules/modules/ascat
History
SusiJo 98ffb09002
Added output files to ASCAT (#1820) 
* add unzip alleles + loci

* fix the partial absolute prefix path

* exchanged deprecated function + added metrics

* updated meta

* tested logRCorrection + cram input

* added BED for WES

* added outputs + alleleCounter version

* test samtools chr operations, fixed cancerit conda

* ch formatting, fasta, bed input

* comment out local tests

* added metrics, bed, ref_fasta

* rm print statement

* added stub outputs

* rm versions.yml

* fix linting

* rm fictitious md5sums for stub-run

* try fixing top-level of stub versions.yml

* ordered inputs alphabetically, ref_fasta -> fasta

* rm R system command, adjust meta.yml

* prettier yml

* added outputs + prefix to outputs

* added test-yml outputs

* change underscores to dots
 		2 years ago
..
main.nf Added output files to ASCAT (#1820) 2 years ago
meta.yml Update ASCAT module (#1805) 2 years ago