FriederikeHanssen 9ae34a01d1 Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts (#1504) ... * Fix typo * Add stub runs for testing input without matched normals * Add missing -stub-run * remove empty file checksum tests and change workflow names * test controlfreec naming * fix output file names * fix output file names * fix output file names * fix conda and container path difference for R scripts * update tar version to work with conda * fix version number in docker * try to fix path to script, pretty sure it won't work * try new ways to set path with wildcard * try which * add which but with escape * remove comment		2022-04-08 11:43:40 +02:00
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assesssignificance	Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts (#1504)	2022-04-08 11:43:40 +02:00
freec	Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts (#1504)	2022-04-08 11:43:40 +02:00
freec2bed	Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts (#1504)	2022-04-08 11:43:40 +02:00
freec2circos	Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts (#1504)	2022-04-08 11:43:40 +02:00
makegraph	Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts (#1504)	2022-04-08 11:43:40 +02:00