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nf-core_modules/modules/flye
Júlia Mir Pedrol bd0fa881f6
Add new module: Flye (#1164)
* changing mv by gzip

* changing mv by gzip

* first module creation

* add test.yml

* add flye to pyestes_modules.yml

* update flye module

* delete functions.nf

* generate test.yml

* fix contains from test.yml

* test file assembly_info.txt with regex

* check that file contains at least contig_1

* fix typo in contains

* update version

* split fastq file for raw runs

* use asm-coverage to reduce memory usage

* fix module name error

* add genome-size

* decrease coverage

* change test data for raw runs

* add coverage and genome size

* Apply comments from code review

Co-authored-by: SusiJo <43847534+SusiJo@users.noreply.github.com>

* after many trys, add a stub run

* remove md5sum for stub run

* Apply suggestions from code review

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* fix review comments

* Apply suggestions from code review

Co-authored-by: SusiJo <43847534+SusiJo@users.noreply.github.com>

* no hardcoded version in stub run

* Update modules/flye/main.nf

Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>

Co-authored-by: SusiJo <43847534+SusiJo@users.noreply.github.com>
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
2 years ago
..
main.nf Add new module: Flye (#1164) 2 years ago
meta.yml Add new module: Flye (#1164) 2 years ago