Adam Talbot 009f7c691c Add module: gatk4/leftalignandtrimvariants (#1808) ... * Added: gatk4/leftalignandtrimvariants Additions: - GATK4/LeftAlignAndTrimVariants module - Use sars-ncov2 test data as this normalises a larger INDEL correctly. Fixes #1801 * fixup: Added index to output spec * fixup: Pattern of tbi output corrected to 'tbi' * gatk4/leftalignandtrimvariants: Added intervals Changes: - gatk4/leftalignandtrimvariants now supports optional interval as BED file - Tests added with and without interval. Not test BED file excludes all variants so no variants are actually normalised. Fixes #1801 * fixup: leftalignandtrimvariants vcf->tbi fix * fixup: gatk4/leftalignandtrimvariants Intervals added to meta.yml		2022-06-28 10:44:08 +02:00
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main.nf	Add module: gatk4/leftalignandtrimvariants (#1808)	2022-06-28 10:44:08 +02:00
meta.yml	Add module: gatk4/leftalignandtrimvariants (#1808)	2022-06-28 10:44:08 +02:00